U-Net: deep learning for cell counting, detection, and morphometry

T Falk, D Mai, R Bensch, Ö Çiçek, A Abdulkadir… - Nature …, 2019 - nature.com
T Falk, D Mai, R Bensch, Ö Çiçek, A Abdulkadir, Y Marrakchi, A Böhm, J Deubner, Z Jäckel…
Nature methods, 2019nature.com
U-Net is a generic deep-learning solution for frequently occurring quantification tasks such
as cell detection and shape measurements in biomedical image data. We present an
ImageJ plugin that enables non-machine-learning experts to analyze their data with U-Net
on either a local computer or a remote server/cloud service. The plugin comes with
pretrained models for single-cell segmentation and allows for U-Net to be adapted to new
tasks on the basis of a few annotated samples.
Abstract
U-Net is a generic deep-learning solution for frequently occurring quantification tasks such as cell detection and shape measurements in biomedical image data. We present an ImageJ plugin that enables non-machine-learning experts to analyze their data with U-Net on either a local computer or a remote server/cloud service. The plugin comes with pretrained models for single-cell segmentation and allows for U-Net to be adapted to new tasks on the basis of a few annotated samples.
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